Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs56841759 chr6:5109982 T/TC 3.2E-9 174 22.75 22.63 5.97 KM Plot
UCEC rs56845602 chr14:22304039 T/G 3.74E-5 171 21.6 22.57 11.53 KM Plot
UCEC rs57009693 chr2:98293240 AAAAGAG/A 1.11E-16 171 24.57 18.67 2.03 KM Plot
UCEC rs57097145 chr3:46722721 C/T 4.14E-6 172 22.85 15.87 6.2 KM Plot
UCEC rs57171311 chr17:45826168 A/G 3.55E-5 172 24.07 21.03 12.2 KM Plot
UCEC rs57413139 chr7:64115664 C/T 0 174 22.57 21.98 2.4 KM Plot
UCEC rs57762044 chr11:85880540 A/T 0.0001 166 22.97 20.25 5.97 KM Plot
UCEC rs58069364 chr3:48046708 G/C 6.44E-6 174 22.63 20.13 11.53 KM Plot
UCEC rs58096630 chr7:64179816 G/T 0 174 22.57 21.98 2.4 KM Plot
UCEC rs58456632 chr19:316792 C/A 2.84E-7 166 24.07 20.08 8.3 KM Plot
UCEC rs58458484 chr14:73617754 C/T 4.47E-7 173 22.57 22.63 10.33 KM Plot
UCEC rs58474108 chr7:64173449 T/G 0 174 22.57 21.98 2.4 KM Plot
UCEC rs585640 chr15:47654416 A/C 3.34E-7 174 22.63 22.38 10.33 KM Plot
UCEC rs58619224 chr14:73536648 G/A 4.44E-7 174 22.57 27.05 10.33 KM Plot
UCEC rs5867965 chr5:54441596 CTCTCTT/C 5.51E-7 172 21.55 23.43 20.33 KM Plot